--- title: "QuickBooks Online Invoicing & Online Payments Setup | MCC" description: "Design invoices, set terms, accept payments and test the flow to the bank. Worked $500 test invoice." url: "https://mcc-solutionsnj.com/bookkeeping/guides/quickbooks-online-invoicing-and-payment-setup" --- Bookkeeping guide · Updated October 12, 2026 # Set Up Invoicing and Online Payments in QuickBooks A clear invoice paid quickly improves your cash flow more than most other bookkeeping tasks. QuickBooks Online lets you build a standard template, add payment links and send reminders, with a few settings worth checking first. By [Matthew Coleman](/about), MCC Solutions **Quick answer.** To set up QuickBooks Online invoicing, open the sales settings, choose Customize look and feel and add your logo, company details, payment terms, preferred payment methods and a late fee note. Keep the layout simple so the amount due and due date are obvious. Want this handled for you? Monthly bookkeeping, cleanup and year-end close for small businesses. Start with a free health check of your books. [Free health check](/bookkeeping/health-check)[Get a quote](/bookkeeping/#interest) **Related:** [NJ 1099 contractor rule (ABC test)](/bookkeeping/guides/nj-independent-contractor-rule-abc-test-2026) · [Trial balance explained](/bookkeeping/guides/trial-balance-explained) · [Owner contribution or loan](/bookkeeping/guides/owner-equity-and-capital-contributions) **Free tools:** [Free invoice template](/bookkeeping/free-invoice-generator) · [How many sales do I need to break even?](/bookkeeping/break-even-calculator) [![Intuit ProAdvisor Gold tier badge](/img/credentials/intuit-proadvisor-gold.png)](https://proadvisor.intuit.com/app/accountant/search?searchId=matthew-coleman77)Gold tier in Intuit's ProAdvisor program. [See my Intuit listing](https://proadvisor.intuit.com/app/accountant/search?searchId=matthew-coleman77) Keeping your own books? Tallyfinch does invoices, bank import and reports on your computer. [See Tallyfinch](/bookkeeping/mcc-books-downloadable-bookkeeping-software) ## Design the template Open the sales settings and choose Customize look and feel. Add your logo, company details and a clear title. Include your payment terms, your preferred payment methods, and a note that explains late fees if you charge them. Keep the layout simple so the amount due and the due date are obvious. ## Products and services list Set up items with descriptions and linked income accounts. A short list of services with plain descriptions gives you consistent income reporting. Mark whether an item is taxable and connect it to the correct tax settings. Too many near-duplicate items cause confusion, so merge them. ## Terms, reminders and late fees Choose default terms such as due on receipt or Net 15. Create reminders that go out before the due date and after it. Tone matters, so write the text as you would to a client you wish to keep. If you add late fees, apply them consistently and record them as income, and check your state rules and contract before charging. ## Accept payments online If you enable online payments, customers can pay from the invoice by card or bank transfer, depending on what is available to you. Review the fees and the time it takes to receive funds. Payments appear in Undeposited Funds or in your bank, depending on settings, so decide how you want to reconcile them. Test with a small invoice to yourself. ## Check the flow end to end Create a test invoice, send it to a personal email, pay it, and watch what happens. Does the invoice mark as paid? Does the deposit match the bank? Is the fee recorded? Fix any step that looks wrong before your customers see it. Use statements for customers with several open invoices, and review the aging report weekly. Finally, store your terms in your customer agreements so the invoice is not the only place a late fee or payment rule appears. Clear terms avoid disputes, and they give you a stronger position if you ever need to pursue collection through an attorney or small claims process. ## Collections routine Run the aging report every Monday. Contact customers with invoices a few days overdue by email, and call anyone over thirty days. Offer a payment plan in writing if needed. Record every contact in the customer notes so that anyone in the business can see the history. A steady routine keeps small overdue balances from turning into write-offs. Decide how you will show sales tax, discounts and deposits before you start. Taxable and non-taxable items should sit on separate lines. Discounts can be a line item or a percentage, but use the same method each time. If you collect a deposit, apply it to the final invoice so that the customer sees what remains. Consistency makes the reports cleaner and helps customers understand the bill. ## Worked example with numbers Create a $500 test invoice to yourself with online payments turned on, pay it with a card, and follow it through. The invoice should become paid, the processor deposit should arrive net of fees, and the bank feed should match the deposit. If fees were $14.80, the deposit is $485.20, and the fee should be recorded as an expense. ## Mistakes that cost money Not testing. Skipping terms and late fee wording. Letting payments sit in Undeposited Funds. Forgetting to record fees. ## Check your work After the test, deposit and fee should match the bank. ## Common questions **Can I charge customers the card fee?** Rules on surcharges vary by state and card network. Check before adding a fee. **Should I send invoices automatically?** For fixed retainers, yes. For variable work, review before sending. This guide is general information, not tax, legal or accounting advice. Rules, fees and due dates change; check with the IRS, the NJ Division of Taxation or a licensed professional for your situation. Let us handle it [### Monthly bookkeeping Categorizing, reconciling and monthly reports, with cleanup, payroll and NJ filings available. Bookkeeping →](/bookkeeping/) [### QuickBooks Online Monthly bookkeeping, cleanup and reconciliation in QuickBooks Online for New Jersey small businesses. Your account stays in your name. QuickBooks →](/bookkeeping/software/quickbooks-online) More guides - [Receipt Capture and Attachments in QuickBooks Online](/bookkeeping/guides/quickbooks-online-receipt-capture-and-attachments) - [How Bank Reconciliation Works in Xero](/bookkeeping/guides/xero-bank-reconciliation-basics) - [Xero Tracking Categories: Setup and Reporting](/bookkeeping/guides/xero-tracking-categories) - [Wave Accounting: Setup Steps and Its Limits](/bookkeeping/guides/wave-accounting-setup-and-limits) Free tool - [Bookkeeping health check](/bookkeeping/health-check) [All guides](/bookkeeping/guides) Reach small business owners, freelancers and bookkeepers who read this guide: [advertise here](/advertise#bookkeeping). Do it yourself ### Chart of Accounts and QuickBooks Import Pack Start your books with an account list built for your type of business, instead of the generic default, and compare it with the accounts you already have. [See what's inside ($24)](/toolkits/chart-of-accounts-quickbooks-import-pack)14-day full refund Tallyfinch ### Books you keep on your own computer Tallyfinch does invoices, bills, bank import, reconciliation and the main reports, in a file you own. $99 once, then $5 a month for updates; the app keeps working if you stop the plan. It does not do payroll or sales tax filing. The free download records up to 60 entries. [See Tallyfinch](/bookkeeping/mcc-books-downloadable-bookkeeping-software) [Download it free](/tools/pro/trial/mccBooks) [Compare the three apps](/software) ## Rather have us keep the books? Ask for a quote. [Get a Quote](/bookkeeping/#interest)[Call (908) 444-6373](tel:+19084446373)